The visitors were given the chance to equalise on the stroke of half time when they won a penalty after Gabriel Mercado shoved Leonardo Bonucci to the ground inside the Sevilla box during a corner kick.
Sampaoli was sent to the stands after the interval for reportedly remonstrating with match referee Mark Clattenburg over the decision.
Despite Sevilla's setbacks, they still matched their opponents on the field and were level late on in the game, but ultimately their resistance gave way as Bonucci lashed home a volley from just outside the penalty area.
The hosts then tried desperately to claw back an equaliser, but they were caught out in injury time when Marchisio laid the ball off to Mario Mandzukic, who fired from close range into the bottom right corner to confirm the outcome of the game.
The result means that Juventus leapfrog Sevilla at the top of Group H with 11 points - four ahead of third-placed Lyon - and secure qualification to the last 16 of the competition, while the La Liga side are still in contention to reach the knockouts on 10 points. body check tags ::